Genome overview of Methylomicrobium alcaliphilum 20Z:

• Gram: –
• Taxonomy: Bacteria > Proteobacteria > Gammaproteobacteria > Methylococcales > Methylococcaceae > Methylomicrobium > Methylomicrobium alcaliphilum
• Assembly information: MAGE_000000532.1
• Total number of CDS ( without artefacts ) = 4117
• Total genome length = 4796711 bases

Transcriptomics data

Transcriptomic analysis of cells from cultures of the M. alcaliphilum 20ZR grown on methanol or methane accounting for the presence of Ca (-Cu\+Cu) or La (-Cu\+Cu) was conducted according to the protocol (Akberdin et al., 2018)

[embeddoc url=”https://sci.sdsu.edu/kalyuzhlab/wp-content/uploads/2018/06/Transcriptomics_all_vs_all_last.xlsx” download=”all” viewer=”microsoft”]

Proteomics data

Proteomic analysis of cells from cultures of the M. alcaliphilum 20ZR grown on methanol or methane accounting for the presence of Ca (-Cu\+Cu) or La (-Cu\+Cu) and a set of starvation experiments were conducted according to the protocol (Akberdin et al., 2018)

[embeddoc url=”https://sci.sdsu.edu/kalyuzhlab/wp-content/uploads/2018/06/Ca_La_Cu-noCu_20Z_set.xlsx” download=”all” viewer=”microsoft”]

[embeddoc url=”https://sci.sdsu.edu/kalyuzhlab/wp-content/uploads/2018/06/Starvation-exp_20Z_set.xlsx” download=”all” viewer=”microsoft”]

Metabolomics data

Metabolomic analysis of cells and spent supernatant from cultures of the M. alcaliphilum 20ZR grown in different growth conditions was performed according to the published protocol (Akberdin et al., 2018 and Akberdin et al., 2018).

[embeddoc url=”https://sci.sdsu.edu/kalyuzhlab/wp-content/uploads/2018/06/Metabolomics-dataset-Cells-Exp-1.xlsx” download=”all” viewer=”microsoft”]

[embeddoc url=”https://sci.sdsu.edu/kalyuzhlab/wp-content/uploads/2018/06/Metabolomics-dataset-Sup-Exp.xlsx” download=”all” viewer=”microsoft”]