- A History of Methanotrophy by Chris Anthony.
- Methanotroph Commons is a resource for biological information on methanotrophic bacteria.
- Joint Genome Institute provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.
- Department of Energy Systems Biology Knowledgebase (KBase) is a software and data platform designed to meet the grand challenge of systems biology: predicting and designing biological function.
- Integrated Microbial Genomes (IMG) system serves as a community resource for comparative analysis and annotation of all publicly available genomes from three domains of life in a uniquely integrated context.
- MicroScope is a web-based platform for microbial comparative genome analysis and manual functional annotation.
- Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences.
- ANI calculator estimates the average nucleotide identity using both best hits (one-way ANI) and reciprocal best hits (two-way ANI) between two genomic datasets.
- PiPHD is a website where grad students around the world discuss their research and make this knowledge more accessible, more understandable, and more interesting.
