{"id":129,"date":"2015-10-13T16:40:02","date_gmt":"2015-10-13T23:40:02","guid":{"rendered":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/?page_id=129"},"modified":"2019-04-22T14:23:55","modified_gmt":"2019-04-22T21:23:55","slug":"useful-links","status":"publish","type":"page","link":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/useful-links\/","title":{"rendered":"Useful Links"},"content":{"rendered":"

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  1. A History of Methanotrophy<\/a> by Chris Anthony.<\/li>\n
  2. Methanotroph Commons<\/a> is a resource for biological information on methanotrophic bacteria.<\/li>\n
  3. Joint Genome Institute<\/a>\u00a0 provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.<\/li>\n
  4. Department of Energy Systems Biology Knowledgebase (KBase)<\/a>\u00a0is a software and data platform designed to meet the grand challenge of systems biology<\/span>: predicting and designing biological function.<\/li>\n
  5. Integrated Microbial Genomes (IMG) system<\/a>\u00a0serves as a community resource for comparative analysis and annotation of all publicly available genomes from three domains of life in a uniquely integrated context.<\/li>\n
  6. MicroScope<\/a>\u00a0is a web-based platform for microbial comparative genome analysis and manual functional annotation.<\/li>\n
  7. Sequence Manipulation Suite<\/a>\u00a0is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences.<\/li>\n
  8. ANI calculator<\/a>\u00a0estimates the average nucleotide identity using both best hits (one-way ANI) and reciprocal best hits (two-way ANI) between two genomic datasets.<\/li>\n
  9. PiPHD<\/a> is a website where grad students around the world discuss their research and\u00a0make this knowledge more accessible, more understandable, and more interesting.\u00a0<\/span><\/li>\n<\/ol>\n

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    A History of Methanotrophy by Chris Anthony. Methanotroph Commons is a resource for biological information on methanotrophic bacteria. Joint Genome Institute\u00a0 provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges. Department of Energy Systems Biology Knowledgebase (KBase)\u00a0is a software and data platform designed to meet the grand challenge of […]<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"

      \r\n \t
    1. A History of Methanotrophy<\/a> by Chris Anthony.<\/li>\r\n \t
    2. Methanotroph Commons<\/a> is a resource for biological information on methanotrophic bacteria.<\/li>\r\n \t
    3. Joint Genome Institute<\/a>\u00a0 provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.<\/li>\r\n \t
    4. Department of Energy Systems Biology Knowledgebase (KBase)<\/a>\u00a0is a software and data platform designed to meet the grand challenge of systems biology<\/span>: predicting and designing biological function.<\/li>\r\n \t
    5. Integrated Microbial Genomes (IMG) system<\/a>\u00a0serves as a community resource for comparative analysis and annotation of all publicly available genomes from three domains of life in a uniquely integrated context.<\/li>\r\n \t
    6. MicroScope<\/a>\u00a0is a web-based platform for microbial comparative genome analysis and manual functional annotation.<\/li>\r\n \t
    7. Sequence Manipulation Suite<\/a>\u00a0is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences.<\/li>\r\n \t
    8. ANI calculator<\/a>\u00a0estimates the average nucleotide identity using both best hits (one-way ANI) and reciprocal best hits (two-way ANI) between two genomic datasets.<\/li>\r\n<\/ol>","_et_gb_content_width":"","footnotes":""},"class_list":["post-129","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/pages\/129","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/comments?post=129"}],"version-history":[{"count":14,"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/pages\/129\/revisions"}],"predecessor-version":[{"id":1123,"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/pages\/129\/revisions\/1123"}],"wp:attachment":[{"href":"https:\/\/sci.sdsu.edu\/kalyuzhlab\/wp-json\/wp\/v2\/media?parent=129"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}